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Table 1 Reindeer index properties for various datasets (on-disk indexes)

From: Transipedia.org: k-mer-based exploration of large RNA sequencing datasets and application to cancer data

Dataset

#Samples

Fastq.gz size (Gb)

Index size (Gb)

RAM (Gb)

Load time (h:m:s)

GSE62852-AML

40

252

16

10.8

00:02:17

GTEx (part)

1119

6100

312

42.2

00:08:58

SEQC/MAQC

16

51

2.4

3.1

00:00:33

CCLE

1019

8900

236

22.3

00:05:57

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Genome Biology

ISSN: 1474-760X

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