Table 2 Query times on the CCLE index (on-disk index)
Query type | # Queries | Query time (s) |
|---|---|---|
31-mers | 1000 | 1.0 |
10000 | 2.0 | |
100000 | 16.0 | |
500000 | 89.0 | |
1000000 | 179.0 | |
Full-length mRNAs (mean size: 1.9 kb) | 1 | 0.6 |
100 | 14.5 | |
1000 | 132.8 |
Query type | # Queries | Query time (s) |
|---|---|---|
31-mers | 1000 | 1.0 |
10000 | 2.0 | |
100000 | 16.0 | |
500000 | 89.0 | |
1000000 | 179.0 | |
Full-length mRNAs (mean size: 1.9 kb) | 1 | 0.6 |
100 | 14.5 | |
1000 | 132.8 |